3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
7OSM|1|25S|U|1208
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_134 not in the Motif Atlas
Homologous match to IL_8C3A_056
Geometric discrepancy: 0.0854
The information below is about IL_8C3A_056
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7OSM|1|25S|G|1207
7OSM|1|25S|U|1208
7OSM|1|25S|G|1209
*
7OSM|1|25S|C|1296
7OSM|1|25S|C|1297

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain AB
5S ribosomal RNA; 5S rRNA
Chain eL20
60S ribosomal protein L20
Chain eL40
Ubiquitin
Chain uL16
60S ribosomal protein L10
Chain uL6
60S ribosomal protein L9-A

Coloring options:


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