3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
7OSM|1|25S|G|1236
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_136 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.3883
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

7OSM|1|25S|G|1234
7OSM|1|25S|U|1235
7OSM|1|25S|G|1236
7OSM|1|25S|G|1237
7OSM|1|25S|C|1238
*
7OSM|1|25S|G|1250
7OSM|1|25S|A|1251
7OSM|1|25S|A|1252
7OSM|1|25S|U|1253
7OSM|1|25S|C|1254

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain uL10
60S acidic ribosomal protein P0
Chain uL11
60S ribosomal protein L12-B

Coloring options:


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