IL_7OSM_157

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_157 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0588

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7OSM|1|25S|G|1898
7OSM|1|25S|G|1899
7OSM|1|25S|A|1900
7OSM|1|25S|A|1901
*
7OSM|1|25S|U|2336
7OSM|1|25S|C|2337

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3