IL_7OSM_166

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7OSM|1|25S|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_166 not in the Motif Atlas

Geometric match to IL_3TZR_002

Geometric discrepancy: 0.2872

The information below is about IL_3TZR_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7OSM|1|25S|C|2204
7OSM|1|25S|U|2205
7OSM|1|25S|G|2206
*
7OSM|1|25S|C|2237
7OSM|1|25S|G|2238

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain PSIT

Transfer RNA; tRNA

Chain uL2

60S ribosomal protein L2-B