IL_7OSM_172

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7OSM|1|25S|A|2397, 7OSM|1|25S|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_172 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0848

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|25S|G|2396
7OSM|1|25S|A|2397
7OSM|1|25S|A|2398
*
7OSM|1|25S|U|2981
7OSM|1|25S|A|2982
7OSM|1|25S|C|2983
7OSM|1|25S|C|2984

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1

Chain uL3

60S ribosomal protein L3