IL_7OSM_175

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7OSM|1|25S|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_175 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1051

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7OSM|1|25S|U|2423
7OSM|1|25S|A|2424
7OSM|1|25S|G|2425
*
7OSM|1|25S|U|2604
7OSM|1|25S|G|2605
7OSM|1|25S|G|2606
7OSM|1|25S|G|2607

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain PSIT

Transfer RNA; tRNA

Chain eL15

60S ribosomal protein L15-A

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL2

60S ribosomal protein L2-B