3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUCC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_180 not in the Motif Atlas
Homologous match to IL_8C3A_110
Geometric discrepancy: 0.1085
The information below is about IL_8C3A_110
Detailed Annotation
Single stack bend with bulge
Broad Annotation
Single stack bend with bulge
Motif group
IL_39137.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

7OSM|1|25S|G|2770
7OSM|1|25S|U|2771
7OSM|1|25S|C|2772
7OSM|1|25S|C|2773
*
7OSM|1|25S|G|2787
7OSM|1|25S|C|2788

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL13
60S ribosomal protein L13
Chain eL18
BJ4_G0033900.mRNA.1.CDS.1
Chain eL42
BJ4_G0001880.mRNA.1.CDS.1
Chain uL15
60S ribosomal protein L28

Coloring options:


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