IL_7OSM_185

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_185 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0945

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OSM|1|25S|U|2835
7OSM|1|25S|C|2836
7OSM|1|25S|A|2837
7OSM|1|25S|A|2838
7OSM|1|25S|G|2839
*
7OSM|1|25S|C|2849
7OSM|1|25S|G|2850
7OSM|1|25S|A|2851
7OSM|1|25S|C|2852
7OSM|1|25S|A|2853

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL40

Ubiquitin

Chain uL16

60S ribosomal protein L10