IL_7OSM_188

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7OSM|1|25S|A|2941, 7OSM|1|25S|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_188 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1108

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OSM|1|25S|C|2881
7OSM|1|25S|U|2882
*
7OSM|1|25S|A|2940
7OSM|1|25S|A|2941
7OSM|1|25S|C|2942
7OSM|1|25S|G|2943

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3