IL_7OSM_190

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

7OSM|1|25S|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_190 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.1214

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

7OSM|1|25S|U|2891
7OSM|1|25S|A|2892
*
7OSM|1|25S|U|2909
7OSM|1|25S|A|2910
7OSM|1|25S|A|2911
7OSM|1|25S|G|2912

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL40

Ubiquitin

Chain uL3

60S ribosomal protein L3

Chain uL6

60S ribosomal protein L9-A