IL_7OSM_208

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

7OSM|1|25S|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_208 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3327

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7OSM|1|25S|G|3318
7OSM|1|25S|U|3319
7OSM|1|25S|A|3320
*
7OSM|1|25S|U|3387
7OSM|1|25S|C|3388

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL31

BJ4_G0008090.mRNA.1.CDS.1

Chain uL3

60S ribosomal protein L3