IL_7OSM_216
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAAU*GAAUUCCGUGAA
- Length
- 17 nucleotides
- Bulged bases
- 7OSM|1|58S|U|82, 7OSM|1|58S|C|84, 7OSM|1|58S|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_216 not in the Motif Atlas
- Homologous match to IL_5TBW_147
- Geometric discrepancy: 0.4409
- The information below is about IL_5TBW_147
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_39287.1
- Basepair signature
- cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
7OSM|1|58S|U|69
7OSM|1|58S|G|70
7OSM|1|58S|A|71
7OSM|1|58S|A|72
7OSM|1|58S|U|73
*
7OSM|1|58S|G|78
7OSM|1|58S|A|79
7OSM|1|58S|A|80
7OSM|1|58S|U|81
7OSM|1|58S|U|82
7OSM|1|58S|C|83
7OSM|1|58S|C|84
7OSM|1|58S|G|85
7OSM|1|58S|U|86
7OSM|1|58S|G|87
7OSM|1|58S|A|88
7OSM|1|58S|A|89
Current chains
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL37
- Ribosomal protein L37
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
Coloring options: