IL_7OSM_228

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7OSM|1|18S|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_228 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.2042

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

7OSM|1|18S|C|1280
7OSM|1|18S|G|1281
*
7OSM|1|18S|C|1426
7OSM|1|18S|A|1427
7OSM|1|18S|G|1428

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain mRNA

MRNA

Chain uS10

40S ribosomal protein S20

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS3

BJ4_G0045400.mRNA.1.CDS.1

Chain uS5

40S ribosomal protein S2