3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAGCCAGCGA*UUGUGAAACUC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OSM|1|18S|G|1478
7OSM|1|18S|A|1479
7OSM|1|18S|G|1480
7OSM|1|18S|C|1481
7OSM|1|18S|C|1482
7OSM|1|18S|A|1483
7OSM|1|18S|G|1484
7OSM|1|18S|C|1485
7OSM|1|18S|G|1486
7OSM|1|18S|A|1487
*
7OSM|1|18S|U|1519
7OSM|1|18S|U|1520
7OSM|1|18S|G|1521
7OSM|1|18S|U|1522
7OSM|1|18S|G|1523
7OSM|1|18S|A|1524
7OSM|1|18S|A|1525
7OSM|1|18S|A|1526
7OSM|1|18S|C|1527
7OSM|1|18S|U|1528
7OSM|1|18S|C|1529

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS19
40S ribosomal protein S19-A
Chain eS25
40S ribosomal protein S25
Chain uS10
40S ribosomal protein S20
Chain uS14
HLJ1_G0030400.mRNA.1.CDS.1
Chain uS3
BJ4_G0045400.mRNA.1.CDS.1
Chain uS7
Rps5p
Chain uS9
BJ4_G0008010.mRNA.1.CDS.1

Coloring options:

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