IL_7OSM_244

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_244 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.2054

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OSM|1|25S|A|2438
7OSM|1|25S|A|2439
7OSM|1|25S|G|2440
*
7OSM|1|25S|C|2507
7OSM|1|25S|U|2508
7OSM|1|25S|U|2509

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eS1

40S ribosomal protein S1