IL_7OT5_085

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

7OT5|1|1|U|2111, 7OT5|1|1|U|2118, 7OT5|1|1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OT5_085 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3696

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7OT5|1|1|G|2110
7OT5|1|1|U|2111
7OT5|1|1|G|2112
7OT5|1|1|U|2113
7OT5|1|1|A|2114
7OT5|1|1|G|2115
7OT5|1|1|G|2116
7OT5|1|1|A|2117
7OT5|1|1|U|2118
7OT5|1|1|A|2119
7OT5|1|1|G|2120
7OT5|1|1|G|2121
*
7OT5|1|1|C|2177
7OT5|1|1|C|2178
7OT5|1|1|C|2179

Current chains

Chain 1

23S rRNA

Nearby chains