IL_7OT5_123

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7OT5|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OT5_123 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1303

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7OT5|1|2|G|147
7OT5|1|2|G|148
7OT5|1|2|A|149
7OT5|1|2|U|150
7OT5|1|2|A|151
7OT5|1|2|A|152
7OT5|1|2|C|153
*
7OT5|1|2|G|168
7OT5|1|2|C|169
7OT5|1|2|U|170
7OT5|1|2|A|171
7OT5|1|2|A|172
7OT5|1|2|U|173
7OT5|1|2|A|174
7OT5|1|2|C|175

Current chains

Chain 2

16S rRNA

Nearby chains

Chain x

30S ribosomal protein S20