IL_7OT5_125

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7OT5|1|2|U|244, 7OT5|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OT5_125 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0862

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7OT5|1|2|G|242
7OT5|1|2|A|243
7OT5|1|2|U|244
7OT5|1|2|U|245
7OT5|1|2|A|246
7OT5|1|2|G|247
*
7OT5|1|2|C|277
7OT5|1|2|G|278
7OT5|1|2|A|279
7OT5|1|2|C|280
7OT5|1|2|G|281
7OT5|1|2|A|282
7OT5|1|2|U|283
7OT5|1|2|C|284

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17