IL_7OT5_136

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7OT5|1|2|A|532, 7OT5|1|2|U|534, 7OT5|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OT5_136 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0849

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7OT5|1|2|G|515
7OT5|1|2|PSU|516
7OT5|1|2|G|517
7OT5|1|2|C|518
7OT5|1|2|C|519
7OT5|1|2|A|520
7OT5|1|2|G|521
*
7OT5|1|2|C|528
7OT5|1|2|G|529
7OT5|1|2|G|530
7OT5|1|2|U|531
7OT5|1|2|A|532
7OT5|1|2|A|533
7OT5|1|2|U|534
7OT5|1|2|A|535
7OT5|1|2|C|536

Current chains

Chain 2

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12