IL_7OTC_007

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_007 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0783

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OTC|1|A|C|239
7OTC|1|A|C|240
7OTC|1|A|A|241
7OTC|1|A|G|242
7OTC|1|A|U|243
7OTC|1|A|A|244
7OTC|1|A|G|245
*
7OTC|1|A|C|253
7OTC|1|A|G|254
7OTC|1|A|A|255
7OTC|1|A|A|256
7OTC|1|A|C|257
7OTC|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15