IL_7OTC_040

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7OTC|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_040 not in the Motif Atlas

Geometric match to IL_1MMS_001

Geometric discrepancy: 0.154

The information below is about IL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7OTC|1|A|G|1059
7OTC|1|A|U|1060
7OTC|1|A|U|1061
7OTC|1|A|G|1062
*
7OTC|1|A|C|1076
7OTC|1|A|A|1077
7OTC|1|A|U|1078
7OTC|1|A|C|1079

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16