IL_7OTC_087

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7OTC|1|A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_087 not in the Motif Atlas

Geometric match to IL_4WF9_046

Geometric discrepancy: 0.387

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7OTC|1|A|C|2129
7OTC|1|A|U|2130
7OTC|1|A|U|2131
7OTC|1|A|U|2132
7OTC|1|A|G|2133
7OTC|1|A|A|2134
7OTC|1|A|A|2135
7OTC|1|A|G|2136
*
7OTC|1|A|U|2155
7OTC|1|A|G|2156
7OTC|1|A|G|2157
7OTC|1|A|A|2158
7OTC|1|A|G|2159

Current chains

Chain A

23S ribosomal RNA

Nearby chains