IL_7OTC_129

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7OTC|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.115

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7OTC|1|a|G|147
7OTC|1|a|G|148
7OTC|1|a|A|149
7OTC|1|a|U|150
7OTC|1|a|A|151
7OTC|1|a|A|152
7OTC|1|a|C|153
*
7OTC|1|a|G|168
7OTC|1|a|C|169
7OTC|1|a|U|170
7OTC|1|a|A|171
7OTC|1|a|A|172
7OTC|1|a|U|173
7OTC|1|a|A|174
7OTC|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20