IL_7OTC_183

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_183 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0531

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7OTC|1|A|G|1666
7OTC|1|A|G|1667
7OTC|1|A|A|1668
7OTC|1|A|A|1669
7OTC|1|A|C|1670
7OTC|1|A|U|1671
7OTC|1|A|A|1672
7OTC|1|A|G|1673
7OTC|1|A|G|1674
*
7OTC|1|A|C|1990
7OTC|1|A|U|1991
7OTC|1|A|G|1992
7OTC|1|A|U|1993
7OTC|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14