IL_7OTC_186

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7OTC|1|A|G|2115, 7OTC|1|A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_186 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4398

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7OTC|1|A|G|2110
7OTC|1|A|U|2111
7OTC|1|A|G|2112
7OTC|1|A|U|2113
7OTC|1|A|A|2114
7OTC|1|A|G|2115
7OTC|1|A|G|2116
7OTC|1|A|A|2117
7OTC|1|A|U|2118
7OTC|1|A|A|2119
7OTC|1|A|G|2120
*
7OTC|1|A|C|2178
7OTC|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains