IL_7OW7_074

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7OW7|1|A|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OW7_074 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2471

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7OW7|1|A|U|2312
7OW7|1|A|A|2313
7OW7|1|A|G|2314
*
7OW7|1|A|C|2325
7OW7|1|A|G|2326

Current chains

Chain A

28S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain Y

60S ribosomal protein L32

Chain k

60S ribosomal protein L28