IL_7OYD_008

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

7OYD|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_008 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1446

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7OYD|1|5|A|121
7OYD|1|5|U|122
*
7OYD|1|5|A|147
7OYD|1|5|A|148
7OYD|1|5|A|149
7OYD|1|5|U|150
7OYD|1|5|G|151
7OYD|1|5|U|152

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

RPL7A

Chain N

Ribosomal protein L15