IL_7OYD_011

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCCGG*CGGCGCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|178
7OYD|1|5|G|179
7OYD|1|5|C|180
7OYD|1|5|C|181
7OYD|1|5|G|182
7OYD|1|5|G|189
*
7OYD|1|5|C|252
7OYD|1|5|G|253
7OYD|1|5|G|254
7OYD|1|5|C|255
7OYD|1|5|G|256
7OYD|1|5|C|257
7OYD|1|5|G|258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain L

L13

Chain h

uL29

Chain j

Ribosomal protein L37