IL_7OYD_015

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7OYD|1|5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_015 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1327

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OYD|1|5|G|348
7OYD|1|5|A|349
7OYD|1|5|C|350
*
7OYD|1|8|G|25
7OYD|1|8|C|26

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

Ribosomal protein L26