IL_7OYD_021

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUCAAC*GCGCAUUU

Length

14 nucleotides

Bulged bases

7OYD|1|5|U|687

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|A|466
7OYD|1|5|U|468
7OYD|1|5|C|469
7OYD|1|5|A|470
7OYD|1|5|A|471
7OYD|1|5|C|472
*
7OYD|1|5|G|682
7OYD|1|5|C|683
7OYD|1|5|G|684
7OYD|1|5|C|685
7OYD|1|5|A|686
7OYD|1|5|U|687
7OYD|1|5|U|688
7OYD|1|5|U|689

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28