IL_7OYD_028

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAGG*CAGCAGCGACU

Length

15 nucleotides

Bulged bases

7OYD|1|5|A|934, 7OYD|1|5|C|936, 7OYD|1|5|G|937, 7OYD|1|5|A|938, 7OYD|1|5|C|939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|A|732
7OYD|1|5|A|733
7OYD|1|5|G|734
7OYD|1|5|G|735
*
7OYD|1|5|C|930
7OYD|1|5|A|931
7OYD|1|5|G|932
7OYD|1|5|C|933
7OYD|1|5|A|934
7OYD|1|5|G|935
7OYD|1|5|C|936
7OYD|1|5|G|937
7OYD|1|5|A|938
7OYD|1|5|C|939
7OYD|1|5|U|940

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

RPL18A