IL_7OYD_029

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCCG*CCCGG

Length

9 nucleotides

Bulged bases

7OYD|1|5|C|738, 7OYD|1|5|C|926, 7OYD|1|5|C|927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|736
7OYD|1|5|C|737
7OYD|1|5|C|738
7OYD|1|5|G|739
*
7OYD|1|5|C|925
7OYD|1|5|C|926
7OYD|1|5|C|927
7OYD|1|5|G|928
7OYD|1|5|G|929

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14