IL_7OYD_030

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCGG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_030 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2284

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7OYD|1|5|G|740
7OYD|1|5|C|741
7OYD|1|5|G|742
7OYD|1|5|G|743
*
7OYD|1|5|C|921
7OYD|1|5|G|922
7OYD|1|5|C|923
7OYD|1|5|C|924

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

RPL18A