IL_7OYD_040

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGGG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|1361
7OYD|1|5|G|1362
7OYD|1|5|G|1363
7OYD|1|5|G|1364
*
7OYD|1|5|C|1383
7OYD|1|5|G|1384
7OYD|1|5|U|1385
7OYD|1|5|G|1386

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain L

L13

Chain N

Ribosomal protein L15

Chain a

uL15