IL_7OYD_042

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_042 not in the Motif Atlas

Geometric match to IL_1M5K_001

Geometric discrepancy: 0.3707

The information below is about IL_1M5K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

7OYD|1|5|G|1429
7OYD|1|5|G|1430
7OYD|1|5|A|1431
7OYD|1|5|U|1432
7OYD|1|5|C|1433
*
7OYD|1|5|G|1459
7OYD|1|5|B8Q|1460
7OYD|1|5|G|1461
7OYD|1|5|C|1462
7OYD|1|5|A|1463
7OYD|1|5|C|1464

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

RPL18

Chain b

60S ribosomal protein L29