IL_7OYD_045

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7OYD|1|5|A|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_045 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.0944

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OYD|1|5|C|1471
7OYD|1|5|C|1472
*
7OYD|1|5|G|1500
7OYD|1|5|A|1501
7OYD|1|5|G|1502

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

RPL18

Chain a

uL15

Chain b

60S ribosomal protein L29