IL_7OYD_058

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_058 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1611

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7OYD|1|5|A|1741
7OYD|1|5|A|1742
*
7OYD|1|5|U|1794
7OYD|1|5|U|1795
7OYD|1|5|U|1796

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain K

5S ribosomal RNA; 5S rRNA

Chain T

eL21