IL_7OYD_061

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_061 not in the Motif Atlas

Geometric match to IL_4LFB_059

Geometric discrepancy: 0.1336

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7OYD|1|5|A|1753
7OYD|1|5|G|1754
7OYD|1|5|A|1755
*
7OYD|1|5|U|1783
7OYD|1|5|A|1784
7OYD|1|5|U|1785

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain K

5S ribosomal RNA; 5S rRNA