IL_7OYD_062

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

7OYD|1|5|G|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_062 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.2268

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7OYD|1|5|C|1818
7OYD|1|5|G|1819
7OYD|1|5|C|1820
*
7OYD|1|5|G|1827
7OYD|1|5|G|1828

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain b

60S ribosomal protein L29