IL_7OYD_073

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7OYD|1|5|G|1979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_073 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4579

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7OYD|1|5|G|1977
7OYD|1|5|U|1978
7OYD|1|5|G|1979
7OYD|1|5|G|1980
7OYD|1|5|C|1981
*
7OYD|1|5|G|1993
7OYD|1|5|A|1994
7OYD|1|5|A|1995
7OYD|1|5|U|1996
7OYD|1|5|C|1997

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

RPLP0