IL_7OYD_074

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OYD|1|5|A|2006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_074 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1786

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OYD|1|5|G|2005
7OYD|1|5|A|2006
7OYD|1|5|G|2007
7OYD|1|5|U|2008
7OYD|1|5|G|2009
*
7OYD|1|5|C|2018
7OYD|1|5|U|2019
7OYD|1|5|C|2020

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

RPLP0