IL_7OYD_095

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_095 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.0611

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7OYD|1|5|G|2851
7OYD|1|5|G|2852
7OYD|1|5|A|2853
7OYD|1|5|A|2854
*
7OYD|1|5|U|3844
7OYD|1|5|C|3845

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

Ribosomal protein L23