IL_7OYD_105

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|G|3718
7OYD|1|5|PSU|3719
7OYD|1|5|C|3720
7OYD|1|5|A|3721
7OYD|1|5|A2M|3722
7OYD|1|5|A|3723
7OYD|1|5|G|3724
7OYD|1|5|U|3725
*
7OYD|1|5|A|3736
7OYD|1|5|A|3737
7OYD|1|5|U|3738
7OYD|1|5|G|3739
7OYD|1|5|A|3740
7OYD|1|5|A|3741
7OYD|1|5|G|3742
7OYD|1|5|C|3743

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain i

60S ribosomal protein L36

Chain o

RPL36A

Chain x

Ribosomal protein uL1