IL_7OYD_107

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

7OYD|1|5|C|3795, 7OYD|1|5|C|3814

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OYD|1|5|C|3785
7OYD|1|5|5MC|3786
7OYD|1|5|A|3787
7OYD|1|5|A|3788
7OYD|1|5|A2M|3789
7OYD|1|5|U|3790
7OYD|1|5|G|3791
7OYD|1|5|C|3792
7OYD|1|5|C|3793
7OYD|1|5|U|3794
7OYD|1|5|C|3795
7OYD|1|5|OMG|3796
7OYD|1|5|U|3797
*
7OYD|1|5|A|3811
7OYD|1|5|C|3812
7OYD|1|5|G|3813
7OYD|1|5|C|3814
7OYD|1|5|G|3815

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60s ribosomal protein l41