IL_7OYD_109

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

G(BGH)G*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_109 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.1371

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OYD|1|5|G|3902
7OYD|1|5|BGH|3903
7OYD|1|5|G|3904
*
7OYD|1|5|C|4565
7OYD|1|5|C|4566
7OYD|1|5|U|4567

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

RPL13A

Chain P

60S ribosomal protein L17