IL_7OYD_110

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7OYD|1|5|A|3905, 7OYD|1|5|C|4564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_110 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0927

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OYD|1|5|G|3904
7OYD|1|5|A|3905
7OYD|1|5|A|3906
*
7OYD|1|5|U|4562
7OYD|1|5|A|4563
7OYD|1|5|C|4564
7OYD|1|5|C|4565

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

60S ribosomal protein L17