IL_7OYD_112

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7OYD|1|5|A|4389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_112 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.1499

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7OYD|1|5|G|3920
7OYD|1|5|A|3921
*
7OYD|1|5|U|4388
7OYD|1|5|A|4389
7OYD|1|5|C|4390
7OYD|1|5|C|4391

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain s1

Dap1b

Chain t

Eukaryotic translation initiation factor 5A-1