IL_7OYD_115
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- G(5MU)GAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7OYD|1|5|G|4088, 7OYD|1|5|C|4166, 7OYD|1|5|U|4167
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_115 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2107
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|G|4086
7OYD|1|5|5MU|4087
7OYD|1|5|G|4088
7OYD|1|5|A|4089
7OYD|1|5|G|4090
7OYD|1|5|G|4091
7OYD|1|5|C|4092
*
7OYD|1|5|G|4165
7OYD|1|5|C|4166
7OYD|1|5|U|4167
7OYD|1|5|C|4168
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein L8
- Chain G
- RPL7A
- Chain X
- RPL23A
Coloring options: