IL_7OYD_116
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GA*UAC
- Length
- 5 nucleotides
- Bulged bases
- 7OYD|1|5|A|4207
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_116 not in the Motif Atlas
- Homologous match to IL_8C3A_107
- Geometric discrepancy: 0.1234
- The information below is about IL_8C3A_107
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
7OYD|1|5|G|4195
7OYD|1|5|A|4196
*
7OYD|1|5|U|4206
7OYD|1|5|A|4207
7OYD|1|5|C|4208
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
- Chain o
- RPL36A
- Chain t
- Eukaryotic translation initiation factor 5A-1
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