IL_7OYD_118

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7OYD|1|5|A|4296

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_118 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2078

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

7OYD|1|5|G|4295
7OYD|1|5|A|4296
7OYD|1|5|PSU|4297
7OYD|1|5|C|4298
*
7OYD|1|5|G|4320
7OYD|1|5|A|4321
7OYD|1|5|C|4322

Current chains

Chain 5

28S rRNA

Nearby chains

Chain T

eL21

Chain b

60S ribosomal protein L29

Chain o

RPL36A